PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A09G1411
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 450aa    MW: 48677.7 Da    PI: 9.879
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A09G1411genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55e-056284123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C++C+k F r  nL+ H r H
  Gh_A09G1411 62 FICEICKKGFQRDQNLQLHRRGH 84
                 89*******************88 PP

2zf-C2H212.90.00033138160123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k +  +s+ k H +t+
  Gh_A09G1411 138 WKCEKCSKKYAVQSDWKAHSKTC 160
                  58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.9E-56184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.89E-76184No hitNo description
SMARTSM003550.056284IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5336284IPR007087Zinc finger, C2H2
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SMARTSM00355100103133IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-4126159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.89E-7133158No hitNo description
SMARTSM00355140138158IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MSDEAFPAAS IGGFIQDPSN ANPNPKPNAN PAKKKRNLPG TPDPDAEVIA LSPKTLMATN  60
RFICEICKKG FQRDQNLQLH RRGHNLPWKL RQRTNKEVRK KVYICPEKTC VHHDPSRALG  120
DLTGIKKHFS RKHGEKKWKC EKCSKKYAVQ SDWKAHSKTC GTREYKCDCG TLFSRKDSFI  180
THRAFCDALA EESARLTSVA ATSLNFRNDT VNLPHGFASR GVQDVAGIPQ FGSGFPQDFS  240
GMPAPGLSEM VQMAPANLFG SSSHFPGFEN GGATSSNSNN LSLSQLPQGL KEEGGNEGNL  300
MESLSSLYSD NQNKQSKANA SPMSATALLQ KAAQMGSTRS SPSFFGNSFG VMSSSSSHTA  360
PTFMASSSAS MSAKSNNLDK LMLQTGGKPS EPSLLSMHHP GSNSFAQSLT RDFLGMSNDQ  420
SPRPFLPQEL AKYAAIGSSI GLSQFTSSNH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
188100KLRQRTNKEVRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.109370.0boll| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012485978.10.0PREDICTED: zinc finger protein JACKDAW-like
SwissprotQ700D21e-130IDD10_ARATH; Zinc finger protein JACKDAW
TrEMBLA0A0B0MFZ60.0A0A0B0MFZ6_G
STRINGPOPTR_0006s13130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-128C2H2-like zinc finger protein